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README.md
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data_files: "generated_descriptions_gpt4o_mini_combined.parquet"
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- config_name: generated_descriptions_gpt4o_mini_cell_type_drugs_pathways
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data_files: "generated_descriptions_gpt4o_mini_cell_type_drugs_pathways.parquet"
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---
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---
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## Dataset Structure
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The dataset contains
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1. NCBI Summary - Contains gene descriptions from NCBI
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2. NCBI-UniProt Summary - Contains combined gene descriptions from NCBI and UniProt
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b. Aging related information
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c. Drug interactions
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d. Pathways and biological processes
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5. Generated Descriptions (Cell Type)
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- Contains AI-generated gene descriptions
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- Model: GPT-4o-mini
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- Factors:
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b. Cell type
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c. Drug interactions
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d. Pathways and biological processes
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## Source Data:
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Some of the data was sourced from the following sources upstream of the GenePT project:
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- NCBI Gene Database
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data_files: "generated_descriptions_gpt4o_mini_combined.parquet"
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- config_name: generated_descriptions_gpt4o_mini_cell_type_drugs_pathways
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data_files: "generated_descriptions_gpt4o_mini_cell_type_drugs_pathways.parquet"
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- config_name: generated_descriptions_gpt4o_cell_type
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data_files: "generated_descriptions_gpt4o_cell_type.parquet"
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---
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---
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## Dataset Structure
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The dataset contains six sub-datasets:
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1. NCBI Summary - Contains gene descriptions from NCBI
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2. NCBI-UniProt Summary - Contains combined gene descriptions from NCBI and UniProt
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b. Aging related information
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c. Drug interactions
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d. Pathways and biological processes
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5. Generated Descriptions (Cell Type and other)
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- Contains AI-generated gene descriptions
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- Model: GPT-4o-mini
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- Factors:
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b. Cell type
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c. Drug interactions
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d. Pathways and biological processes
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6. Generated Descriptions (Cell Type only)
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- Contains AI-generated gene descriptions
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- Model: GPT-4o
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- Factors:
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a. Cell type
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## Source Data:
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Some of the data was sourced from the following sources upstream of the GenePT project:
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- NCBI Gene Database
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