Upload Isoformer

config.json

@@ -10,12 +10,9 @@
   "enformer_dropout_rate": 0.4,
   "enformer_heads": 8,
   "enformer_num_downsamples": 7,
-  "enformer_output_heads": {
-    "human": 5313,
-    "mouse": 1643
-  },
+  "enformer_output_heads": 0,
   "enformer_pos_dropout": 0.01,
-  "enformer_target_length": -1,
+  "enformer_target_length": 896,
   "enformer_use_checkpointing": false,
   "enformer_use_convnext": false,
   "enformer_use_tf_gamma": false,
@@ -53,9 +50,11 @@
   "nt_use_cache": 0.0,
   "nt_vocab_size": 4107,
   "num_heads_omics_cross_attention": 8,
-  "num_protein_tokens_per_seq": 1200,
-  "num_tokens_per_seq_nuctf": 196608,
+  "num_protein_tokens_per_seq": 2048,
+  "num_tokens_per_seq_nuctf": 2048,
   "num_tokens_per_seq_nuctf_rna": 2048,
+  "pool_window_end": 770,
+  "pool_window_start": 765,
   "torch_dtype": "float32",
   "transformers_version": "4.29.2"
 }

pytorch_model.bin

@@ -1,3 +1,3 @@
 version https://git-lfs.github.com/spec/v1
-oid sha256:567905d9a0dfb368a22c838e7f45199e3ebd67897b805a59edd078dfe71504d1
-size 2571091427
+oid sha256:31aafb1a40dfad5e24c5f2ceed80816a2c26bda5b596116122f5fec4425f2caa
+size 2803153818